Good questions all, and I hardly blame you for not reviewing this entire decade-old thread.
1) Service to Union Square was one of the major priorities of the project, as it's one of the biggest commercial centers in Somerville and has no transit access other than buses. One of the early proposals was a single line that went to Union Square and then tunnelled under Prospect Hill to join the Lowell Line; that was rejected due to cost.
2) The maintenance facility is there because with the additional cars needed for the extension, the T is going to need more maintenance capacity, and they don't want to have to drag dead trains all the way through the system to Riverside. They also need to be able to store cars on the north side for start of service each morning. Originally it was going to be in "Yard 8", right next to the Brickbottom Artists' Cooperative, but they hated this plan and had enough clout with the City of Somerville to get them to hate it too.
3) I don't think anyone's even suggested extending to 128. The original planned terminus was West Medford, but Medford hated that idea, plus the Mystic River crossing was going to be stupid expensive. Single-tracking under the bridges would be a gigantic operational pain in the ass, and the bridges through Somerville are close enough together that it'd effectively be single-track for the entire distance, with the occasional passing siding (and not even that for the commuter rail with its much longer trains). And the track and signaling work required for multiple single-track sections probably wouldn't be significantly less expensive than replacing the bridges. (And I speak as someone who is going to be
hugely inconvenienced by the upcoming year-long closure of the Broadway bridge at Ball Square.)
19) Nope, not even the terminus at Mystic Valley Parkway if that gets built. Ya want further-north transit parking, go to Anderson. The GLX is intended to serve neighborhoods.
324) Yes, the College Ave and Union Square branches will be extensions of existing routes, but I don't know which ones or if that's been decided.
2490) (nice numbering scheme there, dude) That's the old Yard 10 lead, which is being rebuilt as the route for Pan Am Railways freight trains coming down the Lowell Line. Currently they continue past where the Lowell Line splits left, almost to where the bridge over the Fitchburg Line used to be, then down the "Willey Track" into the "Valley tracks" behind the commuter rail maintenance facility. That connection is being severed by the GLX; specifically, by the leads to the new Green Line maintenance facility. F-line will tell you that PAR is up in arms about this and all kinds of doom and horror will result; it is unclear to me what the big deal is.